GermlineCluster-class - Output of inferAlleleClusters
Description¶
GermlineCluster contains output from inferAlleleClusters function.
It includes the allele cluster table, the germline set hierarchical clustering,
and the threshold parameters.
Usage¶
"plot"(x, y = NULL)
Arguments¶
- x
- GermlineCluster object
- y
- not in use. missing.
Methods (by generic)¶
plot(x = GermlineCluster, y = missing): Plot the dendrogram for the allele clusters.
Slots¶
germlineSet- the original germline set provided
alleleClusterSet- the renamed germline set with the allele clusters
alleleClusterTable- the allele cluster table
hclustAlleleCluster- the hierarchical clustering object of the germline set.
threshold- the threshold used for the family and the allele clusters.
See also¶
\link{inferAlleleClusters}