germlineASC - Converts IGHV germline set to ASC germline set.

Description¶

Converts IGHV germline set to ASC germline set.

Usage¶

germlineASC(allele_cluster_table, germline)

Arguments¶

allele_cluster_table

The allele cluster table.

germline

An IGHV germline set with matching names to the “imgt_allele” column in the allele_cluster_table.

Value¶

Returns the IGHV germline set with the ASC allele names.

Examples¶

### Not run:
asc_archive <- recentAlleleClusters(doi="10.5281/zenodo.7401239", get_file = TRUE)

Files will be downloaded to tmp directory: /tmp/Rtmpn83kLadoi supplied is not an ‘all versions doi’ for viewing all of the archive records change the doi to:10.5281/zenodo.7401189

# 
# allele_cluster_table <- extractASCTable(archive_file = asc_archive)
# 
# data(HVGERM)
# 
# asc_germline <- germlineASC(allele_cluster_table, germline = HVGERM)