extractASCTable - Extracts the allele cluster table from the archive file.

Description¶

Extracts the allele cluster table from the archive file.

Usage¶

extractASCTable(archive_file = NULL)

Arguments¶

archive_file

A path to the asc archive file. Default is null. (see details)

Value¶

Returns the allele cluster table.

The table columns: new_allele - the ASC given allele name func_group - the ASC cluster number imgt_allele - the original IUIS/IMGT allele name thresh - the allele threshold for ASC-based genotype inference amplicon_length - is the original length of the reference set.

Details¶

For downloading the latest archive file with the updated allele cluster table, use the function recentAlleleClusters.

Examples¶

### Not run:
asc_archive <- recentAlleleClusters(doi="10.5281/zenodo.7401239", get_file = TRUE)

Files will be downloaded to tmp directory: /tmp/Rtmpn83kLadoi supplied is not an ‘all versions doi’ for viewing all of the archive records change the doi to:10.5281/zenodo.7401189

# 
# allele_cluster_table <- extractASCTable(archive_file = asc_archive)