recentAlleleClusters - Retrieving allele similarity clusters Zenodo archive

Description¶

A wrapper function for zenodoArchive, download the most recent allele similarity clusters and thresholds from the zenodo archive. The clusters and thresholds are based on https://yaarilab.github.io/IGHV_reference_book/ At the moment only available for human IGHV reference set.

Usage¶

recentAlleleClusters(
doi = "10.5281/zenodo.7401189",
path,
get_file = F,
quite = F
)

Arguments¶

doi

The doi for the archive to download. Default is the IGHV set.

path

The output folder for saving the archive files. Default is to a temporary directory.

get_file

Logical (FALSE by default). Do you want to return the path for the file downloaded.

quite

Logical (FALSE by default). Do you want to suppress informative messages

Value¶

If get_file is TRUE, the function returns the path to the archive file

Examples¶

### Not run:
recentAlleleClusters(doi="10.5281/zenodo.7401189")

Files will be downloaded to tmp directory: /tmp/Rtmpn83kLa